Our Nourishing Table main logo
  • Recipes
  • Cookbook
  • Shop
  • Recipes
  • Cookbook
  • Shop

  • About Sarah
  • Work With Me

GET my debut cookbook!

‘Our Nourishing Week’

GET my debut cookbook!
‘Our Nourishing Week’

order now
Home > Recipes > Meal type > Muffins, Cupcakes & Donuts
Gluten free carrot cake cupcakes

Gluten Free Carrot Cake Cupcakes

  • GF

No ratings yet
Prep Time 20 minutes mins
Cook Time 15 minutes mins
Total Time 35 minutes mins
Deliciously moist and fluffy gluten free carrot cake cupcakes with a perfectly sweet maple cream cheese icing.
Jump to Recipe
16 April 2025
August 25, 2025

by

Sarah Bell

Disclosure: This page contains affiliate links, which I earn a small a commission from when you purchase through a link, at no extra cost to you. Thank you for your support!

Share the Love!

  • Facebook
  • X

If you’re looking for the most perfectly moist, fluffy and tasty gluten free carrot cake cupcakes then look no further because you’ve found them. I tested these cupcakes a total of 4 times and even though they tasted amazing on the first round, I knew they could get even better. I can safely say that they are absolutely perfect and incredibly yummy, especially as they’re served topped with just sweet enough maple cream cheese and a some chopped walnuts.

Gluten free carrot cake cupcakes
Contents:
  1. What’s to Love About this Recipe?
  2. Ingredients Notes & Substitutions 
  3. How to Make Gluten-free Carrot Cake Cupcakes
  4. Storage
  5. Gluten Free Carrot Cake Cupcakes

And if you’re in the mood for more carrot cake-like recipes then I highly recommend you try my Gluten Free Carrot Cake, Carrot Cake Baked Oats or my Healthy Carrot Cake Pancakes. 

What’s to Love About this Recipe?

  • gluten free – made with a base of almond flour, these cupcakes are completely gluten free but you won’t be able to tell as they are still so moist and fluffy. 
  • dairy optional – there’s no dairy in the actual cupcakes, just in the cream cheese frosting. Easily swap out the cream cheese for a dairy free cream cheese or eat them without frosting for a dairy-free option. 
  • quick & easy – these cupcakes are very quick and easy to throw together, taking just 20 minutes prep time and 15 minutes to bake. 
A gluten free carrot cake cupcake halved.

Ingredients Notes & Substitutions 

Below is a list of all of the simple ingredients that you will need for this recipe, including possible substitutions and ingredients notes. Please see the recipe card at the bottom of this post for the complete recipe and ingredient quantities. 

  • buckwheat flour – despite what the name might suggest, buckwheat flour is of no relation to wheat flour and is completely gluten free. If you can’t get buckwheat flour then you can try substituting the buckwheat flour and tapioca starch for a gluten-free flour blend.
  • tapioca starch – you can swap tapioca for arrowroot flour or corn flour. Tapioca starch is also known as tapioca flour. 
  • baking powder – I prefer using an aluminium free baking powder. If you need these cupcakes to be gluten free then make sure you choose a gluten-free baking powder. 
  • almond flour – almond flour makes these muffins perfectly moist with a beautiful soft texture. You can also use blanched almond meal. If you are using blanched almond meal and it is quite course then blend in a high powered blender until you get a finer texture. 
  • coconut sugar – coconut sugar can be swapped for rapadura sugar or brown sugar. 
  • spices – in this recipe I’ve used ground cinnamon, ground cloves, ground nutmeg and ground ginger. You can swap all of these for an apple pie spice mix.
  • large eggs
  • extra virgin olive oil – olive oil can be swapped for 
  • milk – I’ve used soy milk in this recipe, however you can use regular milk or your preferred dairy-free milk. 
  • carrots – I recommend grating the carrots on the fine side of the grater as this way they kind of disappear into the cake as it cooks. 
  • walnuts – walnuts can be swapped for other nuts like toasted almonds, pecans or cashews. 
Ingredients for gluten free carrot cake cupcakes.

Maple cream cheese frosting

  • pure maple syrup
  • cream cheese (I’ve used lactose free cream cheese)
  • lemon zest 
  • lemon juice
Ingredients for maple cream cheese frosting.

Would you like to save this?

We’ll email this post to you, so you can come back to it later!

How to Make Gluten-free Carrot Cake Cupcakes

To make these delicious cupcakes follow the instructions below. 

First, preheat the oven and line a 12-hole muffin tin with cupcake liners. 

To a large mixing bowl sieve the buckwheat flour, tapioca starch, baking powder and spices. Next add the coconut sugar and almond flour and whisk until just combined. 

In a seperate bowl, whisk together the eggs, olive oil and soy milk. Pour the egg mixture into the dry mixture. Add the grated carrot and then stir to combine.

Dry ingredients for gluten free carrot cake cupcakes in a glass bowl.
Wet ingredients for gluten free carrot cake cupcakes whisked together in a glass mixing bowl.
Wet ingredients added to dry ingredients in a large mixing bowl.
Batter for gluten free carrot cake cupcakes.

Divide the batter into the cupcake liners. I like to use an ice cream scoop as it perfectly divides the mixture up evenly and keep all of the cupcakes a uniform size. 

Place the cupcakes into the oven to bake for 15 minutes. Once they are golden brown and cooked through, remove from the oven. Cool in the tin for around 5 minutes before transferring to a cooling rack to cool completely. To test if they’re cooked completely, insert a toothpick or a skewer into the centre of the cupcake, if it comes out clean or with a few crumbs then they are ready.

Once cooled, make the maple cream cheese frosting. Add the cream cheese, maple syrup, lemon juice and lemon zest to a medium sized mixing bowl. Use electric beaters to beat until well combined and smooth and creamy. 

Spoon some frosting onto the tops of the cupcakes and spread out with a palette knife or butter knife. Top with some chopped nuts and serve.

Cupcake batter added to cupcake liners.
Baked gluten free carrot cake cupcakes in the muffin tin.
Gluten free carrot cake cupcakes with cream cheese frosting.

Storage

Because of the cream cheese frosting, store these gluten free carrot cupcakes in the fridge in an airtight container for up to 5 days. You can store unfrosted cupcakes at room temperature in an airtight container for 2-3 days – the fridge is best in warmer climates however as the carrot and almond flour can go off quite quickly in warm temperatures.

A gluten free carrot cake cupcake halved.

Gluten Free Carrot Cake Cupcakes

No ratings yet
By: Sarah Bell
Deliciously moist and fluffy gluten free carrot cake cupcakes with a perfectly sweet maple cream cheese icing.
Gluten free carrot cake cupcakes
print pin Leave Review
Prep Time 20 minutes mins
Cook Time 15 minutes mins
Total Time 35 minutes mins
Servings: 12 cupcakes

Equipment

  • 2 Mixing Bowls
  • 1 Sieve
  • Measuring spoons
  • 1 Mixing Spoon
  • 12 whole muffin tin
  • Cupcake Papers
  • Cooling Rack
  • Palette Knife
  • Electric Beaters

Ingredients

Cupcakes
  • ½ cup buckwheat flour
  • ½ cup tapioca flour
  • 2 teaspoon baking powder aluminium free
  • 1 teaspoon ground cinnamon
  • Pinch each of ground ginger, nutmeg and cloves
  • 2 cups blanched almond meal or almond flour
  • 1 cup coconut sugar
  • ⅔ cup olive oil extra virgin
  • 3 large eggs
  • ¼ cup milk
  • 2 cups carrot, finely grated
Cream Cheese Icing
  • 250 grams cream cheese
  • Zest from 1 lemon
  • 1 tablespoon lemon juice
  • 2 tablespoons pure maple syrup
Prevent your screen from going dark

Instructions 

  1. Preheat the oven to 170°C. Line a 12 whole muffin tin with cupcake papers and set aside.
  2. In a large mixing bowl sieve buckwheat flour, tapioca, baking powder, cinnamon, ground ginger, nutmeg and cloves. Add the coconut sugar and almond flour and whisk lightly to combine.
  3. In a medium sized mixing bowl whisk together the eggs, olive oil and milk.
  4. Pour egg mixture into dry ingredients, add the grated carrots and stir through until just combined.
  5. Divide the cupcake batter between the 12 cupcake papers and place into the oven to bake for 15 minutes or until golden brown and cooked through when tested with a skewer. Remove from the oven and allow to cool in the tin for 5 minutes before transferring to a wire rack to cool completely.
  6. To make the icing, add the cream cheese, lemon zest, lemon juice and maple syrup into a medium mixing bowl. Use electric beaters and beat until well combined.
  7. Once the cupcakes are completely cooled, add a spoonful of cream cheese icing to the top of each cupcake and spread over the surface with a palette knife or butter knife. Top with some roughly chopped walnuts and serve.

Notes

Nutrition facts are an estimate only. 

Make it dairy free

The cupcakes in this recipe are dairy free however the cream cheese icing has dairy in it. To make dairy free, either omit the icing or swap the cream cheese for a vegan dairy free cream cheese. 

Storage 

Store iced cupcakes in an airtight container in the fridge for up to 5 days. Store un-iced cupcakes in an airtight container at room temperature for 2-3 days and then store in the fridge for up to another 2 days. 

Nutrition

Calories: 401kcalCarbohydrates: 30gProtein: 8gFat: 30gSaturated Fat: 7gPolyunsaturated Fat: 2gMonounsaturated Fat: 11gTrans Fat: 0.01gCholesterol: 68mgSodium: 198mgPotassium: 160mgFiber: 3gSugar: 14gVitamin A: 3920IUVitamin C: 2mgCalcium: 126mgIron: 1mg
Course: Sweets
Cuisine: Australian
Diet: Diabetic,Gluten Free
Keyword: almond flour,carrot cake,carrots,cupcakes
Tried this recipe?Post your recreation to Instagram and mention @ournourishingtable or tag #ournourishingtable! Don’t forget to let us know how you went by rating this recipe and commenting below.

You might also like…

A large slice of healthy, gluten free carrot cake, being held above the carrot cake on a cake server.
Cakes & Loaves
  • DF
  • GF

Gluten Free Carrot Cake (Healthy)

A stack of healthy carrot cake pancakes, topped with coconut yoghurt and chopped walnuts, with pure maple syrup being drizzled over the top.
Breakfast
  • DF
  • GF

Healthy Carrot Cake Pancakes (Gluten Free & Dairy Free)

gluten free dairy free chocolate cake with chocolate ganache
Cakes & Loaves
  • DF
  • GF

Dairy Free Chocolate Cake – Gluten Free

gluten free strawberry cupcakes on a white and pink backdrop with a strawberry placed on top of the frosting.
Muffins, Cupcakes & Donuts
  • GF

Gluten Free Strawberry Cupcakes

My debut cookbook–Our Nourishing Week

My debut cookbook Our Nourishing Week is a collection of 85+ easy and nutritious recipes for the whole family. It includes 6 weeks of meal plans, complete with shopping lists – simplifying your family meals for an easy, healthy week – every week.

order now

Hi, I’m Sarah!

I’m a nutritionist turned healthy recipe developer who is all about creating delicious food designed to nourish. I love using wholefood ingredients and have a strong focus on gluten free, dairy free and refined sugar free recipes.

MORE ABOUT ME >

Like this recipe? Leave a comment!

Cancel reply

Your email address will not be published. Required fields are marked *

Recipe Rating




  1. Alisha Bennett

    April 25, 2025 AT 2.08 PM

    When do we add the carrots…

    Reply
    1. Sarah Bell

      April 28, 2025 AT 2.41 PM

      I’m very sorry, the carrots have now been added into the instructions.

      Reply

My debut cookbook–Our Nourishing Week

My debut cookbook Our Nourishing Week is a collection of 85+ easy and nutritious recipes for the whole family. It includes 6 weeks of meal plans, complete with shopping lists – simplifying your family meals for an easy, healthy week – every week.

order now

Hi, I’m Sarah!

I’m a nutritionist turned healthy recipe developer who is all about creating delicious food designed to nourish. I love using wholefood ingredients and have a strong focus on gluten free, dairy free and refined sugar free recipes.

MORE ABOUT ME >

Hey there, I’m Sarah!

I’m a Bachelor qualified Nutritionist turned healthy recipe developer and the creator of Our Nourishing Table.

I love creating easy to make, nutrient-filled recipes from quick dinner recipes and make-ahead breakfasts to healthy treats and luscious desserts (with a healthy spin of course).

more about me

Hungry for more?

Please enable JavaScript in your browser to complete this form.
Loading

SEARCH RECIPES

  • Recipe Index
  • Breakfast
  • Mains
  • Snacks
  • Drinks
  • Healthy Treats

Discover

  • Cookbook
  • About Sarah
  • Work with me

follow

The Boring Bits

  • Privacy Policy
  • Terms & Conditions
back to top
Copyright © 2025 Our Nourishing Table.

Design by White With One. Coding by Made to Thrive.

Rate This Recipe

Your vote:




A rating is required
A name is required
An email is required